JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRD_chr3_184375054_184394829	0/0	c0030	2868	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0031	2868	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0032	2868	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0033	2868	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0034	2868	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0035	2868	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0036	2868	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	c0037	2868	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRFAM7A_chr15_30355566_30398540	0/0	c0001	1237	46	2	9	27	1	7	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0002	1239	12	7	4	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0003	1239	10	0	5	0	2	3	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0004	1239	9	0	5	4	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0005	1239	8	7	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0006	1239	4	4	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0007	1237	4	0	2	1	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0008	1239	4	4	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0009	1239	4	1	0	1	0	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/1	c0010	1239	3	1	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0011	1239	3	0	2	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0012	1239	2	2	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0013	1239	2	2	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0014	1239	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0015	1239	2	1	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0016	1239	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0017	1239	2	0	0	0	0	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0018	1237	1	0	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0019	1239	1	0	0	0	1	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0020	1239	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0021	1239	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0022	1239	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0023	1237	1	0	0	1	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0024	1237	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0025	1239	1	0	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0026	1239	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0027	1239	1	0	0	0	1	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0028	1239	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0029	1239	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0030	1239	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	c0031	1239	1	0	0	0	1	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRM1_chr11_62903679_62926363	1/1	c0001	1383	341	69	48	177	15	30	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0002	1383	30	2	15	10	1	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0003	1383	17	12	2	1	0	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0004	1384	13	1	3	7	0	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0005	1383	9	1	6	0	0	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0006	1383	3	0	0	3	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0007	1384	2	0	0	2	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0008	1383	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0009	1383	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0010	1383	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	c0011	1383	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363