JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRM1_chr11_62903679_62926363	0/0	c0012	1383	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM2_chr7_136863652_137025213	1/1	c0001	1401	304	78	59	113	8	44	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0002	1401	5	0	0	5	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0003	1401	2	1	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0004	1401	2	0	0	2	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0005	1401	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0006	1401	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0007	1401	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0008	1401	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0009	1401	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	c0011	1401	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM3_chr1_239381568_239920450	1/1	c0001	1773	112	44	25	21	6	14	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	c0002	1773	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	c0003	1773	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	c0004	1773	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	c0005	1773	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM4_chr11_46378789_46396776	1/1	c0001	1440	252	70	43	101	9	27	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	c0002	1440	34	8	11	7	1	7	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	c0003	1440	20	19	1	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	c0004	1440	1	1	0	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	c0005	1440	1	0	1	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM5_chr15_33963497_34072458	1/1	c0001	1599	305	76	46	135	10	36	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0002	1599	18	4	6	7	0	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0003	1599	4	4	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0004	1599	3	3	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0005	1599	2	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0006	1599	1	0	0	0	0	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0007	1599	1	0	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0008	1599	1	0	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0009	1599	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0010	1599	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	c0011	1599	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRNA10_chr11_3660587_3676384	1/1	c0001	1353	413	87	65	198	16	45	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0002	1353	6	0	3	0	2	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0003	1353	6	0	0	6	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0004	1353	3	0	0	3	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0005	1353	3	3	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0006	1353	3	2	1	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0007	1353	2	2	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0008	1353	2	0	0	2	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0009	1353	1	0	0	0	0	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0010	1353	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0011	1353	1	0	0	0	0	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0012	1353	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0013	1353	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0014	1353	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0016	1353	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0017	1353	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384