JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRNA10_chr11_3660587_3676384	0/0	c0018	1353	1	0	1	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0019	1353	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	c0020	1353	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA1_chr2_174742592_174769472	1/1	c0001	1374	305	64	50	132	17	40	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0002	1374	42	11	7	17	1	6	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0003	1374	8	8	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0004	1374	3	3	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0005	1374	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0006	1374	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0007	1374	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0008	1374	1	0	0	1	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0009	1374	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0010	1374	1	0	0	1	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0011	1374	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0012	1374	1	0	1	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0013	1374	1	0	0	1	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	c0014	1374	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA2_chr8_27454756_27484261	0/0	c0001	1590	160	53	38	47	5	17	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	1/1	c0002	1590	154	13	34	67	12	26	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0003	1590	121	17	12	89	1	2	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0004	1590	6	4	1	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0005	1590	3	1	0	2	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0006	1590	2	2	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0007	1590	2	1	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0008	1590	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0009	1590	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0010	1590	1	0	0	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0011	1590	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0012	1590	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0013	1590	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0014	1590	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0015	1590	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0016	1590	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	c0017	1590	1	0	0	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA3_chr15_78590309_78625996	0/0	c0001	1515	152	22	33	81	2	14	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	1/0	c0002	1518	80	16	13	31	3	16	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0003	1515	57	0	0	57	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0004	1515	46	28	4	14	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/1	c0005	1515	35	8	12	1	5	8	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0006	1515	16	14	0	2	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0007	1521	6	0	0	6	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0008	1515	4	0	3	0	0	1	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0009	1518	3	0	1	0	1	1	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0010	1521	2	0	2	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0011	1518	2	0	2	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0012	1518	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0013	1518	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0014	1518	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0016	1515	1	0	0	0	1	0	copy fasta	CHRNA3	chr15	78590309	78625996