JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRNA3_chr15_78590309_78625996	0/0	c0017	1515	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA4_chr20_63338223_63366349	0/1	c0001	1884	58	15	12	22	2	6	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0002	1884	38	2	15	7	4	10	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	1/0	c0003	1884	29	22	3	0	1	2	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0004	1884	16	2	1	6	0	7	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0005	1884	6	0	0	6	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0006	1885	5	1	1	2	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0007	1884	4	3	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0008	1884	3	0	0	0	1	2	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0009	1884	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0010	1872	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0011	1884	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0012	1884	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0013	1884	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0014	1885	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0015	1884	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0016	1884	1	0	0	0	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	c0017	1885	1	0	0	0	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA5_chr15_78560520_78600269	1/0	c0001	1407	283	70	58	122	6	26	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0002	1407	48	0	0	48	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/1	c0003	1407	34	3	14	5	5	6	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0004	1407	8	8	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0005	1407	3	1	0	0	1	1	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0006	1407	2	2	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0007	1407	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0008	1407	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0009	1407	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	c0010	1407	1	0	0	0	0	1	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA6_chr8_42747620_42773786	1/1	c0001	1485	342	94	68	135	8	35	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0002	1485	2	0	0	2	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0003	1485	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0004	1485	1	1	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0005	1485	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0006	1485	1	0	0	0	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0007	1485	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	c0008	1485	1	1	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA7_chr15_32025515_32178018	0/1	c0001	1509	99	34	24	27	2	11	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0002	1509	73	13	12	43	0	5	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0003	1509	41	1	10	19	3	8	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0004	1509	31	17	2	12	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0005	1509	25	1	12	11	1	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0006	1509	11	3	1	4	2	1	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0007	1509	9	4	0	5	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0008	1509	3	3	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0009	1509	3	0	0	3	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0010	1509	3	1	2	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0011	1509	3	2	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0012	1509	2	0	0	2	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0013	1509	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018