JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRNA7_chr15_32025515_32178018	0/0	c0014	1509	1	0	0	0	0	1	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	c0015	1509	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA9_chr4_40330333_40360217	0/1	c0001	1440	148	7	28	85	9	18	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0002	1440	74	26	6	32	1	9	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0003	1440	59	3	10	37	2	7	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0004	1440	29	19	6	0	1	3	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0005	1440	28	1	12	7	2	6	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0006	1440	20	9	11	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0007	1440	11	0	0	11	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0008	1440	9	8	1	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0009	1440	7	0	1	6	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0010	1440	6	6	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0011	1440	6	6	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0012	1440	4	4	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0013	1440	4	4	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	1/0	c0014	1440	4	1	1	0	1	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0015	1440	3	0	0	0	0	3	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0016	1440	3	3	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0017	1440	2	0	0	2	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0018	1440	1	0	1	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0019	1440	1	1	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	c0020	1440	1	0	1	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNB1_chr17_7440061_7462710	1/0	c0001	1506	331	92	53	146	6	33	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/1	c0002	1506	27	1	17	0	4	4	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	c0003	1506	4	0	0	4	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	c0004	1506	3	3	0	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	c0005	1506	1	0	0	1	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	c0006	1506	1	0	0	0	0	1	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	c0007	1506	1	0	0	1	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB2_chr1_154562778_154585013	1/1	c0001	1509	416	86	82	182	16	48	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0002	1509	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0003	1509	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0004	1509	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0005	1509	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0006	1509	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	c0007	1509	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB3_chr8_42692366_42742407	1/1	c0001	1377	266	84	53	91	8	28	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	c0002	1377	9	9	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	c0003	1377	3	0	1	0	0	2	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	c0004	1377	2	2	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	c0006	1377	1	0	0	1	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB4_chr15_78619111_78646210	1/1	c0001	1497	368	66	66	186	15	33	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0002	1497	15	1	0	12	1	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0003	1497	6	1	4	0	0	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0004	1497	5	5	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0005	1497	5	5	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0006	1497	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0007	1497	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0008	1497	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210