JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRNB4_chr15_78619111_78646210	0/0	c0009	1497	1	0	0	0	0	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0010	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0011	1497	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0012	1497	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0013	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0014	1497	1	0	1	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0015	1497	1	0	1	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0016	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0017	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0018	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	c0019	1497	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRND_chr2_232521160_232541664	1/1	c0001	1554	221	65	31	90	8	25	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0002	1554	193	29	26	109	10	19	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0003	1554	4	0	0	4	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0004	1554	3	0	2	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0005	1554	3	0	0	3	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0006	1554	2	0	2	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0007	1554	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0008	1554	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0009	1554	1	1	0	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0010	1554	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0011	1554	1	0	1	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0012	1554	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0013	1554	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0014	1554	1	0	0	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0015	1554	1	1	0	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0016	1554	1	0	0	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0017	1554	1	0	0	0	0	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	c0018	1554	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRNE_chr17_4892771_4908098	1/0	c0001	1482	301	52	42	163	10	33	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0002	1482	62	23	13	19	2	5	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/1	c0003	1482	31	3	4	22	1	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0004	1482	13	10	3	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0005	1482	12	1	11	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0006	1482	7	0	5	1	1	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0007	1482	5	5	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0008	1482	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0009	1482	2	0	0	0	0	2	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0010	1482	2	0	0	0	2	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0011	1482	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0012	1482	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0013	1482	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0014	1482	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0015	1482	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0016	1482	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0017	1482	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	c0018	1482	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNG_chr2_232534692_232553115	1/0	c0001	1554	311	74	51	134	16	35	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/1	c0002	1554	67	15	8	29	1	13	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0003	1554	34	4	2	27	0	1	copy fasta	CHRNG	chr2	232534692	232553115