JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHRNG_chr2_232534692_232553115	0/0	c0004	1554	9	0	0	8	1	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0005	1554	2	0	0	2	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0006	1554	1	1	0	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0007	1554	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0008	1554	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0009	1554	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0010	1554	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0011	1554	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0012	1554	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0013	1554	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0014	1554	1	0	0	0	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0015	1554	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	c0016	1554	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHST10_chr2_100386860_100422668	0/1	c0001	1071	188	53	34	76	8	16	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	1/0	c0002	1071	123	22	35	37	6	22	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0003	1071	11	0	0	11	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0004	1071	9	0	0	9	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0005	1071	7	7	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0006	1071	5	0	0	4	0	1	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0007	1071	5	0	0	5	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0008	1071	5	5	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0009	1071	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0010	1071	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0011	1071	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0012	1071	1	0	1	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0013	1071	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0014	1071	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0015	1071	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	c0016	1071	1	0	0	0	0	1	copy fasta	CHST10	chr2	100386860	100422668
CHST11_chr12_104451948_104767014	1/1	c0001	1059	238	73	46	74	10	33	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	c0002	1059	1	0	0	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	c0003	1059	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST12_chr7_2398611_2453484	1/1	c0001	1245	232	73	57	59	10	31	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0002	1245	38	1	4	26	0	7	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0003	1245	33	0	6	27	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0004	1245	18	1	4	12	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0005	1245	8	8	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0006	1245	3	3	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0007	1245	3	2	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0008	1245	2	0	0	1	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0009	1245	2	0	0	0	2	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0010	1245	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0011	1245	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0012	1245	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0013	1245	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	c0014	1245	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST13_chr3_126519155_126548291	1/0	c0001	1026	185	36	43	76	8	21	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/1	c0002	1026	73	3	17	45	5	2	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0003	1026	30	5	3	16	2	4	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0004	1026	27	20	7	0	0	0	copy fasta	CHST13	chr3	126519155	126548291