JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHST13_chr3_126519155_126548291	0/0	c0005	1026	21	12	3	0	0	6	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0006	1026	8	7	1	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0007	1026	7	5	1	0	1	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0008	1026	6	6	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0009	1026	4	0	3	1	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0010	1026	1	1	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0011	1026	1	1	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	c0012	1026	1	0	0	0	0	1	copy fasta	CHST13	chr3	126519155	126548291
CHST14_chr15_40465984_40478158	1/1	c0001	1131	404	91	68	180	18	45	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	c0002	1131	3	3	0	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	c0003	1131	2	2	0	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	c0004	1131	1	0	1	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	c0006	1131	1	0	1	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST15_chr10_124002668_124098598	1/1	c0001	1686	286	62	58	108	12	44	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0002	1686	43	4	9	30	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0003	1686	23	8	8	3	4	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0004	1686	6	3	0	3	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0005	1686	4	4	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0006	1686	4	0	1	3	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0007	1686	4	4	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0008	1686	3	3	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0009	1686	3	3	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0010	1686	3	0	2	0	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0011	1686	2	0	0	2	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0012	1686	2	1	1	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0013	1686	2	1	1	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0014	1686	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0015	1686	1	0	0	0	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0016	1686	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0017	1686	1	0	0	1	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0018	1686	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0019	1686	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	c0020	1686	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST1_chr11_45642689_45670622	0/1	c0001	1236	230	40	41	103	14	31	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	1/0	c0002	1236	152	54	22	66	2	7	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	c0003	1236	1	0	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	c0004	1236	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	c0005	1236	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	c0006	1236	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST2_chr3_143114771_143129014	1/1	c0001	1593	451	91	71	225	18	44	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0002	1593	2	2	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0003	1593	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0004	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0005	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014