JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHST2_chr3_143114771_143129014	0/0	c0011	1623	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0012	1593	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	c0013	1593	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST3_chr10_71959395_72018558	1/1	c0001	1440	264	64	37	125	5	31	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0002	1440	80	15	25	20	5	15	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0003	1440	9	0	0	9	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0004	1440	3	3	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0005	1440	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0006	1440	2	0	0	2	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0007	1440	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0008	1440	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0009	1440	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0010	1440	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0011	1440	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0012	1440	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0013	1440	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0014	1440	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	c0015	1440	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST4_chr16_71521426_71543748	1/1	c0001	1161	403	91	74	182	13	41	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0002	1161	2	2	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0003	1161	2	0	0	2	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0004	1161	2	0	0	0	0	2	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0005	1161	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0006	1161	1	0	0	0	0	1	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0008	1161	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0009	1161	1	0	1	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0010	1161	1	0	1	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0011	1161	1	0	0	0	1	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0012	1161	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	c0013	1161	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST5_chr16_75523530_75541108	1/0	c0001	1236	265	39	65	109	12	39	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/1	c0002	1236	70	11	12	36	4	6	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0003	1236	19	15	4	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0004	1236	9	9	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0005	1236	7	0	0	7	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0006	1236	6	6	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0007	1236	5	5	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0008	1236	3	3	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0009	1236	2	1	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0010	1236	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0011	1236	1	0	0	0	0	1	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0012	1236	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0013	1236	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0014	1236	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0015	1236	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	c0016	1236	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST6_chr16_75467052_75500441	1/0	c0001	1188	342	82	59	148	15	37	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0002	1188	8	1	5	0	2	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0003	1188	4	0	2	0	0	2	copy fasta	CHST6	chr16	75467052	75500441