JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHST6_chr16_75467052_75500441	0/0	c0004	1188	4	4	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0005	1188	3	3	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0006	1188	2	0	0	2	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0007	1188	1	0	0	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0008	1188	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0009	1188	1	0	0	0	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0010	1188	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0011	1188	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0012	1188	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0013	1188	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	c0014	1188	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST7_chrX_46568765_46603496	1/1	c0001	1461	292	59	55	137	13	26	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0002	1461	5	0	0	3	0	2	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0003	1461	5	4	1	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0004	1461	4	4	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0005	1461	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0006	1462	1	0	0	1	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0007	1462	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0008	1461	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	c0009	1461	1	0	1	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST8_chr19_33616953_33778506	1/1	c0001	1275	232	70	55	61	15	29	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0002	1275	11	11	0	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0003	1275	7	7	0	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0004	1275	1	0	0	1	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0005	1275	1	0	1	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0006	1275	1	0	0	0	1	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	c0007	1275	1	0	0	0	0	1	copy fasta	CHST8	chr19	33616953	33778506
CHST9_chr18_26901481_27190308	1/1	c0001	1332	252	69	52	91	7	31	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	c0002	1332	4	4	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	c0003	1332	2	0	2	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	c0004	1332	2	0	0	0	1	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	c0005	1332	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	c0006	1332	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHSY1_chr15_101170727_101257048	0/0	c0001	2409	122	14	19	76	5	8	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0002	2409	80	8	7	60	1	4	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	1/0	c0003	2409	56	6	22	15	5	7	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0004	2409	46	26	9	7	2	2	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0005	2409	17	9	1	7	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0006	2409	14	0	3	11	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/1	c0007	2409	13	0	8	0	3	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0008	2409	10	0	0	10	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0009	2409	8	6	2	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0010	2409	6	0	0	0	0	6	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0011	2409	6	0	1	3	0	2	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0012	2409	6	0	3	0	0	3	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0013	2409	6	5	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0014	2409	5	0	0	5	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0015	2409	4	1	0	0	2	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0016	2409	3	2	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0017	2409	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048