JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHSY1_chr15_101170727_101257048	0/0	c0018	2409	2	0	2	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0019	2409	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0020	2409	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0021	2409	1	0	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0022	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0023	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0024	2409	1	0	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0025	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0026	2409	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0027	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0028	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0029	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0030	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0031	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	c0032	2409	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY3_chr5_129899465_130191634	0/0	c0001	2649	72	17	14	32	4	5	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0002	2649	62	4	19	30	4	5	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0003	2649	34	19	4	8	1	2	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0004	2649	30	16	3	8	0	3	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0005	2649	23	10	3	8	1	1	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0006	2649	16	2	3	9	0	2	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0007	2649	9	8	1	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0008	2649	6	0	0	6	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0009	2649	6	6	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0010	2649	5	0	0	5	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0011	2649	2	2	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0012	2649	2	2	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0013	2649	1	0	0	1	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0014	2649	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0015	2649	1	0	0	0	0	1	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0016	2649	1	0	1	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0017	2649	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0018	2649	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0019	2649	1	0	0	1	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0020	2649	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	c0021	2649	1	0	0	0	0	1	copy fasta	CHSY3	chr5	129899465	130191634
CHTF18_chr16_783620_803074	0/0	c0001	2928	130	5	42	60	9	14	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/1	c0002	2928	60	0	4	45	4	6	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0003	2928	33	0	3	30	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0004	2928	18	13	1	0	1	3	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0005	2928	13	2	4	2	0	5	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0006	2928	13	0	1	7	0	5	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0007	2928	11	5	3	2	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0008	2928	8	0	8	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0009	2928	6	6	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0010	2928	5	0	0	5	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0011	2928	5	5	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0012	2928	5	5	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0013	2928	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0014	2928	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074