JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHTF18_chr16_783620_803074	0/0	c0015	2928	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0016	2928	4	0	0	0	2	2	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0017	2928	4	4	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0018	2928	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0019	2928	3	0	0	3	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0020	2928	3	1	2	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0021	2928	3	2	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0022	2928	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0023	2928	3	0	1	0	0	2	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0024	2928	3	0	1	0	1	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0025	2928	3	0	3	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0026	2928	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0027	2928	3	3	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0028	2928	3	0	0	3	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0029	2928	3	0	1	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0030	2928	3	2	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0031	2928	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	1/0	c0032	2928	2	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0033	2928	2	0	0	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0034	2928	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0035	2928	2	0	0	0	1	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0036	2928	2	0	1	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0037	2928	2	0	0	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0038	2928	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0039	2928	2	0	0	2	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0040	2928	2	0	2	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0041	2928	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0042	2928	2	2	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0043	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0044	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0045	2928	1	0	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0046	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0047	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0048	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0049	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0050	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0051	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0052	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0053	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0054	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0055	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0056	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0057	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0058	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0059	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0060	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0061	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0062	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0063	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0064	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074