JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CHTF18_chr16_783620_803074	0/0	c0065	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0066	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0067	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0068	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0069	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0070	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0071	2928	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0072	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0073	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0074	2928	1	0	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0075	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0076	2938	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0077	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0078	2928	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0079	2928	1	0	1	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	c0080	2928	1	0	0	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF8_chr16_69113010_69137588	1/1	c0001	366	362	93	74	131	16	46	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	c0002	366	1	0	0	1	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	c0003	366	1	1	0	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTOP_chr1_153629066_153651306	1/1	c0001	747	371	96	68	147	12	46	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	c0002	747	1	0	0	1	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHUK_chr10_100183300_100234596	0/1	c0001	2238	194	69	29	84	4	7	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	1/0	c0002	2238	177	21	37	86	6	26	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0003	2238	19	0	0	16	0	3	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0004	2238	2	0	2	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0005	2238	2	0	2	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0006	2238	2	0	1	0	0	1	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0007	2238	1	0	1	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0008	2238	1	1	0	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0009	2238	1	1	0	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0010	2238	1	0	0	1	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0011	2238	1	0	0	1	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	c0012	2238	1	0	0	0	0	1	copy fasta	CHUK	chr10	100183300	100234596
CHURC1_chr14_64909455_64940368	1/1	c0001	339	389	92	62	176	13	44	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	c0002	339	2	2	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	c0003	339	1	0	0	0	1	0	copy fasta	CHURC1	chr14	64909455	64940368
CIAO1_chr2_96261225_96279173	1/1	c0001	1020	390	85	68	188	10	37	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0002	1020	4	0	0	1	0	3	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0003	1020	2	0	0	2	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0004	1020	2	2	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0005	1020	2	0	0	0	0	2	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0006	1020	1	0	0	1	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0007	1020	1	0	0	1	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0008	1020	1	1	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	c0009	1020	1	0	0	1	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO2A_chr15_64067565_64098838	0/1	c0001	483	307	73	56	129	14	34	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	1/0	c0002	483	27	24	2	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	c0003	483	3	0	0	3	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	c0004	483	1	1	0	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2B_chr16_66927065_66939402	1/1	c0001	492	392	97	60	175	14	44	copy fasta	CIAO2B	chr16	66927065	66939402