JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIAO2B_chr16_66927065_66939402	0/0	c0002	492	2	0	0	2	0	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO2B_chr16_66927065_66939402	0/0	c0003	492	1	1	0	0	0	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO2B_chr16_66927065_66939402	0/0	c0004	492	1	0	0	1	0	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO3_chr16_724765_745997	0/0	c0001	1431	173	13	37	92	3	28	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	1/1	c0002	1431	170	60	38	42	8	20	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0003	1431	16	1	0	15	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0004	1431	8	7	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0005	1431	8	7	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0006	1431	5	5	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0007	1431	4	4	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0008	1431	2	0	0	2	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0009	1431	2	2	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0010	1431	2	0	0	2	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0011	1431	2	0	0	1	1	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0012	1431	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0013	1431	1	0	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0014	1431	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0016	1431	1	0	0	0	1	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	c0017	1431	1	0	0	0	1	0	copy fasta	CIAO3	chr16	724765	745997
CIAPIN1_chr16_57423187_57452385	1/1	c0001	939	352	79	59	166	7	39	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0002	939	11	0	0	6	0	5	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0003	939	9	5	1	2	1	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0004	939	8	0	4	0	2	2	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0005	939	4	4	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0006	939	2	2	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0007	939	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0008	939	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0009	988	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	c0010	939	1	0	0	1	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIART_chr1_150277554_150292093	1/1	c0001	1158	397	84	67	182	16	46	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0002	1158	7	0	0	7	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0003	1158	7	7	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0004	1158	2	0	2	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0005	1158	1	0	1	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0006	1158	1	0	0	1	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	c0007	1158	1	1	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIB1_chr15_90224975_90238941	1/1	c0001	576	447	90	84	217	14	40	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0002	576	5	0	0	5	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0003	576	2	0	0	0	0	2	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0004	576	1	1	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0005	576	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0006	595	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0007	576	1	0	1	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0008	576	1	1	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	c0009	576	1	0	1	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB2_chr15_78099606_78136445	1/1	c0001	564	323	72	58	157	6	28	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0002	564	40	10	12	7	5	6	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0003	564	19	4	6	0	1	8	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0004	564	3	3	0	0	0	0	copy fasta	CIB2	chr15	78099606	78136445