JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIB2_chr15_78099606_78136445	0/0	c0005	564	2	0	0	0	0	2	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0006	564	1	0	0	0	1	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0007	564	1	0	0	0	1	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	c0008	564	1	1	0	0	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB3_chr19_16156368_16178525	0/0	c0001	564	288	54	53	140	13	28	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	1/1	c0002	564	66	20	13	18	1	12	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0003	564	14	13	1	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0004	564	5	5	0	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0005	564	2	0	2	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0006	564	1	1	0	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0007	564	1	1	0	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	c0008	564	1	0	1	0	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB4_chr2_26576205_26646366	0/1	c0001	558	189	40	33	91	3	21	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	1/0	c0002	558	128	33	30	44	9	11	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0003	558	10	9	1	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0004	558	10	10	0	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0005	558	4	0	0	4	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0006	558	1	0	1	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0007	558	1	0	1	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	c0008	461	1	0	0	1	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIBAR1_chr8_93695550_93736527	1/1	c0001	870	332	71	63	152	10	34	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0002	867	20	19	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0003	870	17	4	7	0	4	2	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0004	870	2	2	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0005	870	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0006	870	1	0	0	0	0	1	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	c0007	870	1	0	0	0	0	1	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR2_chr16_85093358_85117472	1/1	c0001	915	402	82	73	197	9	39	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0002	915	19	0	6	0	3	10	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0003	915	5	4	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0004	915	3	3	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0005	915	1	0	0	0	1	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0006	915	1	0	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0007	915	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0008	915	1	0	1	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0009	915	1	0	0	0	0	1	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0010	915	1	0	0	0	1	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	c0011	915	1	0	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIC_chr19_42264252_42300796	1/1	c0001	7554	133	42	32	37	2	18	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0002	7554	15	1	9	0	2	3	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0003	7554	10	0	4	2	1	3	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0004	7554	6	5	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0005	7554	3	3	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0006	7554	2	0	0	2	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0007	7554	2	1	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0008	7554	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0009	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0010	7554	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0011	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0012	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796