JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIC_chr19_42264252_42300796	0/0	c0013	7554	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0014	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0015	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0016	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0017	7554	1	0	0	1	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0018	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0019	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0020	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0021	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0022	7554	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0023	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0024	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0025	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0026	7554	1	0	0	1	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0027	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0028	7554	1	0	0	0	1	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0029	7554	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0030	7554	1	0	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0031	7554	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	c0032	7554	1	0	0	1	0	0	copy fasta	CIC	chr19	42264252	42300796
CIDEA_chr18_12249361_12282595	1/1	c0001	660	254	72	47	87	14	32	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0002	660	176	18	31	113	2	12	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0003	660	7	7	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0004	660	6	0	6	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0005	660	1	1	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0006	660	1	1	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0007	660	1	1	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0008	660	1	0	1	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	c0009	660	1	0	1	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEB_chr14_24300187_24312977	1/1	c0001	660	404	86	65	190	15	46	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0002	660	4	4	0	0	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0003	660	1	0	0	0	0	1	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0004	660	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0005	660	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0006	660	1	0	0	0	1	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0007	660	1	0	1	0	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	c0008	660	1	0	0	0	0	1	copy fasta	CIDEB	chr14	24300187	24312977
CIDEC_chr3_9861714_9885253	1/0	c0001	717	226	40	39	103	13	30	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0002	717	129	43	24	51	2	9	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0003	717	26	4	6	8	2	6	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0004	717	6	5	0	0	0	1	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0005	717	5	0	0	5	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/1	c0006	717	5	0	4	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0007	717	5	0	3	0	1	1	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0008	717	2	0	1	0	0	1	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0009	717	2	0	0	2	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0010	717	1	1	0	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0011	717	1	1	0	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0012	717	1	0	1	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	c0013	717	1	0	0	1	0	0	copy fasta	CIDEC	chr3	9861714	9885253