JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	c0001	3393	80	18	22	29	2	9	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/1	c0002	3393	69	19	11	31	0	7	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0003	3393	64	1	10	36	4	13	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0004	3393	22	0	8	14	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0005	3393	19	2	0	15	0	2	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	1/0	c0006	3393	15	13	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0007	3393	15	1	2	12	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0008	3393	12	0	0	12	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0009	3393	10	0	2	7	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0010	3393	9	0	1	8	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0011	3393	8	0	0	7	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0012	3393	5	5	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0013	3393	4	1	2	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0014	3393	3	3	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0015	3393	3	0	2	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0016	3393	3	3	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0017	3393	3	0	0	3	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0018	3393	2	0	0	0	2	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0019	3393	2	0	0	2	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0020	3393	2	2	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0021	3393	2	2	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0022	3393	2	0	1	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0023	3393	2	1	0	0	1	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0024	3393	2	2	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0025	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0026	3393	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0027	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0028	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0029	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0030	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0031	3393	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0032	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0033	3393	1	0	0	0	1	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0034	3393	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0035	3393	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0036	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0037	3393	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0038	3393	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0039	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0040	3393	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0041	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0042	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0043	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0044	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0045	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0046	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0047	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0048	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0049	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0050	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394