JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	c0051	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0052	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0053	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0054	3393	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0055	3393	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0056	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0057	3393	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	c0058	3393	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CILK1_chr6_52996303_53066824	1/1	c0001	1899	145	30	23	70	4	16	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	c0002	1899	79	34	11	32	2	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	c0003	1899	15	5	6	0	2	2	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	c0004	1899	3	3	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	c0005	1899	2	2	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILP2_chr19_19533265_19551659	1/1	c0001	3471	245	48	49	106	14	26	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0002	3471	49	28	4	9	0	8	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0003	3471	35	11	11	0	3	10	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0004	3471	2	2	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0005	3471	2	0	0	2	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0006	3471	2	0	0	2	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0007	3471	2	0	0	0	0	2	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0008	3471	2	2	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0009	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0010	3471	1	0	0	0	0	1	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0011	3471	1	1	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0012	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0013	3471	1	0	0	0	1	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0014	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0015	3471	1	1	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0016	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0017	3471	1	0	0	0	0	1	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0018	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0019	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0020	3471	1	1	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	c0021	3471	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP_chr15_65189760_65216473	0/1	c0001	3555	149	19	19	83	6	21	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0002	3555	115	28	39	28	8	12	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0003	3555	30	15	11	1	0	3	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0004	3555	6	6	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0005	3555	6	6	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0006	3555	5	2	2	0	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0007	3555	3	3	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0008	3555	2	2	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0009	3555	2	0	0	2	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0010	3555	2	2	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0011	3555	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0012	3555	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0013	3555	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0014	3555	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0015	3555	1	0	1	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	1/0	c0016	3555	1	0	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473