JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CILP_chr15_65189760_65216473	0/0	c0017	3555	1	0	0	0	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0018	3555	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0019	3555	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0020	3555	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0021	3555	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	c0022	3555	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CINP_chr14_102343282_102367890	1/1	c0001	639	220	69	41	86	6	16	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0002	639	114	8	19	69	5	13	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0003	639	78	11	19	32	6	10	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0004	639	3	0	1	0	1	1	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0005	639	2	0	2	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0006	639	1	1	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0007	639	1	0	0	1	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	c0008	639	1	1	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CIP2A_chr3_108544864_108594438	1/1	c0001	2718	208	36	48	77	10	35	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0002	2718	91	5	17	65	0	4	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0003	2718	24	21	3	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0004	2718	8	7	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0005	2718	6	5	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0006	2718	5	4	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0007	2718	5	5	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0008	2718	4	4	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0009	2718	3	0	1	0	1	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0010	2718	3	0	3	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0011	2718	2	2	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0012	2718	2	0	0	0	0	2	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0013	2718	2	0	0	0	1	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0014	2718	2	2	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0015	2718	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0016	2718	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0017	2718	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0018	2718	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0019	2718	1	0	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0020	2718	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	c0021	2718	1	0	0	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIPC_chr14_77093258_77122287	1/1	c0001	1200	367	77	77	156	14	41	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0002	1200	32	2	0	29	0	1	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0003	1200	15	14	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0004	1200	7	0	0	7	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0006	1200	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0007	1200	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0008	1200	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	c0009	1200	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIR1_chr2_174343022_174400712	1/1	c0001	1353	325	70	62	131	14	46	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	c0002	1353	16	15	1	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	c0003	1353	2	2	0	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	c0004	1353	2	0	0	2	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	c0005	1353	1	1	0	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	c0006	1353	1	0	0	1	0	0	copy fasta	CIR1	chr2	174343022	174400712