JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIR1_chr2_174343022_174400712	0/0	c0007	1353	1	0	1	0	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIRBP_chr19_1264332_1279810	0/1	c0001	894	204	55	54	57	13	24	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	1/0	c0002	894	68	29	16	9	3	10	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	c0003	894	5	5	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	c0004	894	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	c0005	894	1	0	0	0	0	1	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	c0006	894	1	0	0	0	0	1	copy fasta	CIRBP	chr19	1264332	1279810
CIROP_chr14_23094062_23109989	0/0	c0001	2364	127	11	31	63	4	18	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/1	c0002	2367	68	0	9	52	1	5	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0003	2367	33	10	1	15	1	6	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0004	2364	30	3	4	23	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0005	2364	26	2	3	21	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0006	2352	19	16	0	0	0	3	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0007	2364	18	1	4	4	0	9	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0008	2364	16	1	10	0	1	4	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0009	2364	8	0	2	5	0	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0010	2367	8	6	1	0	0	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0011	2364	7	0	4	3	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0012	2364	7	7	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	1/0	c0013	2367	6	5	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0014	2352	5	0	0	5	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0015	2367	5	4	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0016	2364	4	0	0	4	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0017	2352	4	4	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0018	2367	4	0	0	4	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0019	2367	4	4	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0020	2364	3	0	0	3	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0021	2364	3	0	0	3	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0022	2367	3	2	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0023	2364	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0024	2367	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0025	2352	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0026	2352	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0027	2352	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0028	2364	2	0	0	1	0	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0029	2364	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0030	2364	2	0	1	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0031	2364	2	0	0	2	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0032	2367	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0033	2367	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0034	2367	2	2	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0035	2364	1	0	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0036	2364	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0037	2352	1	0	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0038	2352	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0039	2352	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0040	2352	1	0	1	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0041	2352	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0042	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0043	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989