JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CIROP_chr14_23094062_23109989	0/0	c0044	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0045	2367	1	0	0	0	1	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0046	2367	1	0	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0047	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0048	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0049	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0050	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0051	2367	1	1	0	0	0	0	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	c0052	2367	1	0	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CISD1_chr10_58264162_58294586	1/1	c0001	327	386	92	68	170	8	46	copy fasta	CISD1	chr10	58264162	58294586
CISD2_chr4_102863992_102897807	1/1	c0001	408	353	89	56	152	14	40	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	c0002	408	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD3_chr17_38725341_38740605	0/1	c0001	384	338	78	56	157	12	34	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	c0002	384	65	5	19	35	0	6	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	c0003	384	8	7	1	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISH_chr3_50601489_50616774	1/1	c0001	777	253	64	35	103	12	37	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0002	777	89	10	16	60	0	3	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0003	777	4	0	0	4	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0004	777	2	0	2	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0005	777	2	0	0	2	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0006	777	2	2	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0007	777	2	0	2	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0008	777	2	0	0	2	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0009	777	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0010	777	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0011	777	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	c0012	777	1	0	1	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CITED1_chrX_72296646_72310914	0/1	c0001	582	202	48	39	76	7	31	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	1/0	c0002	582	72	0	3	67	0	1	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	c0003	582	25	25	0	0	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	c0004	582	1	1	0	0	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	c0005	583	1	0	0	1	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	c0006	581	1	0	0	1	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED2_chr6_139366807_139379648	1/1	c0001	813	275	82	60	92	12	27	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0002	813	35	6	10	4	4	11	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0003	813	4	4	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0004	807	3	3	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0005	813	2	1	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0006	813	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0007	813	1	0	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	c0008	786	1	1	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED4_chr1_40856054_40867363	1/1	c0001	555	245	57	34	99	13	40	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0002	555	160	16	29	108	0	7	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0003	555	10	8	2	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0004	555	8	5	3	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0005	555	4	1	3	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0006	555	3	0	1	2	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0007	555	2	0	0	2	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0008	555	2	2	0	0	0	0	copy fasta	CITED4	chr1	40856054	40867363
CITED4_chr1_40856054_40867363	0/0	c0009	555	2	0	0	0	2	0	copy fasta	CITED4	chr1	40856054	40867363