JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACTR1A_chr10_102474229_102507712	0/0	g0231	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0232	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0233	1	0	0	0	0	1	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0234	1	1	0	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0235	1	1	0	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0236	1	1	0	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0237	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0238	1	0	0	0	1	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0239	1	0	0	0	0	1	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0240	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0241	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0242	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0243	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0244	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0245	1	0	1	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0246	1	0	1	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0247	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0248	1	0	1	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0249	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0250	1	1	0	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0251	1	1	0	0	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0252	1	0	0	0	0	1	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0253	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0254	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	g0255	1	0	0	1	0	0	ACTR1A	chr10	102474229	102507712
ACTR1B_chr2_97650939_97669044	1/1	g0001	114	4	20	65	2	21	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0002	77	1	28	35	9	4	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0003	28	0	0	25	0	3	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0004	23	14	0	9	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0005	22	16	4	1	0	1	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0006	12	10	2	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0007	10	10	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0008	9	0	0	9	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0009	9	0	5	0	4	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0010	7	7	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0011	6	6	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0012	6	0	0	6	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0013	6	2	3	0	1	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0014	5	5	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0015	3	0	1	0	0	2	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0016	3	0	2	0	0	1	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0017	2	2	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0018	2	0	0	2	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0019	2	0	0	0	0	2	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0020	2	2	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0021	2	0	0	2	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0022	2	0	2	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0023	2	0	0	0	2	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0024	2	2	0	0	0	0	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	g0025	1	1	0	0	0	0	ACTR1B	chr2	97650939	97669044