JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCND2_chr12_4268762_4310353	0/0	g0356	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0357	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0358	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0359	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0360	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0361	1	0	0	0	0	1	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0362	1	0	0	0	0	1	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0363	1	0	0	0	1	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0364	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0365	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0366	1	1	0	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0367	1	1	0	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0368	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0369	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0370	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0371	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0372	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0373	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0374	1	0	0	0	0	1	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0375	1	0	0	1	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0376	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0377	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0378	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0379	1	0	0	0	0	1	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0380	1	1	0	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0381	1	0	1	0	0	0	CCND2	chr12	4268762	4310353
CCND2_chr12_4268762_4310353	0/0	g0382	1	1	0	0	0	0	CCND2	chr12	4268762	4310353
CCND3_chr6_41929952_41946808	0/0	g0001	81	10	12	46	1	12	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0002	65	2	14	40	6	3	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0003	57	18	8	26	1	4	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0004	32	1	6	20	0	5	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0005	30	4	2	22	0	2	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/1	g0006	26	0	7	11	0	7	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0007	25	16	3	5	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0008	23	7	15	0	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0009	17	0	3	14	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0010	8	0	0	7	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0011	5	5	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0012	5	4	1	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0013	4	0	1	0	2	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0014	4	0	2	0	1	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0015	4	4	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0016	4	0	0	0	2	2	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0017	3	0	0	3	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0018	3	0	0	0	1	2	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0019	3	3	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0020	3	3	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0021	3	0	0	2	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0022	2	0	0	2	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0023	2	0	2	0	0	0	CCND3	chr6	41929952	41946808