JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCND3_chr6_41929952_41946808	0/0	g0024	2	0	1	0	1	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0025	2	2	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0026	2	2	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0027	2	2	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0028	2	0	0	1	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0029	2	2	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0030	2	2	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	1/0	g0031	1	0	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0032	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0033	1	0	1	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0034	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0035	1	0	0	0	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0036	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0037	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0038	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0039	1	0	1	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0040	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0041	1	0	0	0	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0042	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0043	1	0	1	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0044	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0045	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0046	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0047	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0048	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0049	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0050	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0051	1	0	0	0	0	1	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0052	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0053	1	0	0	0	1	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0054	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0055	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0056	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0057	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0058	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0059	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0060	1	0	0	1	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0061	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0062	1	1	0	0	0	0	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	g0063	1	0	0	0	0	1	CCND3	chr6	41929952	41946808
CCNDBP1_chr15_43180403_43202177	0/0	g0001	40	2	5	28	2	3	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0002	17	3	3	9	0	2	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0003	8	1	0	4	0	3	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0004	7	1	5	0	1	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0005	7	0	2	5	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0006	6	1	2	1	1	1	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0007	6	0	2	2	1	1	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0008	6	0	0	5	1	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0009	6	0	2	0	1	3	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0010	6	0	0	6	0	0	CCNDBP1	chr15	43180403	43202177