JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNDBP1_chr15_43180403_43202177	0/0	g0161	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0162	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0163	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0164	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0165	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0166	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0167	1	0	1	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0168	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0169	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0170	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0171	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0172	1	0	1	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0173	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0174	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0175	1	0	0	1	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0176	1	0	1	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0177	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0178	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0179	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0180	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0181	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0182	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0183	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0184	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0185	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0186	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0187	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0188	1	1	0	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	g0189	1	0	1	0	0	0	CCNDBP1	chr15	43180403	43202177
CCNE1_chr19_29806991_29829312	0/0	g0001	52	12	8	28	2	2	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	1/0	g0002	45	10	4	23	1	6	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/1	g0003	24	3	5	4	6	5	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0004	23	8	3	9	0	3	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0005	9	0	1	7	0	1	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0006	9	0	0	9	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0007	9	0	0	9	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0008	8	2	0	5	0	1	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0009	6	1	3	0	1	1	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0010	5	0	0	5	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0011	5	1	1	3	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0012	4	4	0	0	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0013	4	2	0	2	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0014	4	0	3	0	0	1	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0015	4	0	0	2	0	2	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0016	4	4	0	0	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0017	4	1	2	1	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0018	4	0	3	0	0	1	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0019	4	3	1	0	0	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0020	4	0	3	0	1	0	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	g0021	3	0	0	3	0	0	CCNE1	chr19	29806991	29829312