JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNF_chr16_2424447_2463854	0/0	g0249	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0250	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0251	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0252	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0253	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0254	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0255	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0256	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0257	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0258	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0259	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0260	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0261	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0262	1	0	1	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0263	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0264	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0265	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0266	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0267	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	g0268	1	1	0	0	0	0	CCNF	chr16	2424447	2463854
CCNG1_chr5_163432595_163450016	0/0	g0001	113	23	19	61	2	8	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/1	g0002	94	25	19	32	4	13	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0003	64	5	17	30	2	10	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0004	26	0	1	25	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0005	14	11	3	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0006	11	0	0	11	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0007	7	1	0	2	0	4	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0008	6	0	0	6	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0009	5	4	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0010	5	3	2	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0011	5	1	2	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0012	5	1	4	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0013	4	0	1	1	0	2	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0014	3	3	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0015	3	1	0	1	0	1	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0016	3	0	0	3	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0017	3	1	0	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0018	3	3	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0019	3	0	0	3	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0020	2	0	0	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0021	2	2	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0022	2	0	1	0	0	1	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0023	2	0	0	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0024	2	1	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0025	2	0	0	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0026	2	0	0	2	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0027	1	0	0	0	0	1	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0028	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0029	1	0	0	0	0	1	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0030	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016