JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNG1_chr5_163432595_163450016	0/0	g0031	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0032	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0033	1	0	0	0	0	1	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0034	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0035	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0036	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0037	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0038	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0039	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0040	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0041	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0042	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0043	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0044	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0045	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0046	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0047	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0048	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	1/0	g0049	1	0	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0050	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0051	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0052	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0053	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0054	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0055	1	0	1	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0056	1	1	0	0	0	0	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	g0057	1	0	0	1	0	0	CCNG1	chr5	163432595	163450016
CCNG2_chr4_77152207_77175060	0/1	g0001	89	10	23	41	5	9	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0002	43	1	2	35	2	3	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	1/0	g0003	19	1	3	8	2	4	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0004	19	1	5	9	2	2	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0005	15	1	7	2	1	4	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0006	14	3	2	6	0	3	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0007	13	2	2	8	0	1	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0008	11	1	1	5	0	4	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0009	11	0	0	8	2	1	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0010	7	7	0	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0011	6	0	6	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0012	6	0	1	3	0	2	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0013	5	1	0	4	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0014	5	0	1	3	0	1	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0015	5	0	0	5	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0016	5	5	0	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0017	4	4	0	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0018	4	0	0	3	0	1	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0019	4	4	0	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0020	4	0	0	4	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0021	4	0	2	0	1	1	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0022	3	3	0	0	0	0	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	g0023	3	3	0	0	0	0	CCNG2	chr4	77152207	77175060