JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNH_chr5_87389274_87417930	0/0	g0107	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0108	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0109	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0110	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0111	1	0	1	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0112	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0113	1	0	1	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0114	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0115	1	0	0	0	1	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0116	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0117	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0118	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0119	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0120	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0121	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0122	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0123	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0124	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0125	1	0	1	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0126	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0127	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0128	1	0	1	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0129	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0130	1	1	0	0	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0131	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0132	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0133	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	g0134	1	0	0	1	0	0	CCNH	chr5	87389274	87417930
CCNI2_chr5_132742426_132759403	1/1	g0001	116	6	29	48	8	23	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0002	81	31	2	44	0	4	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0003	53	0	7	44	0	2	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0004	22	0	0	21	1	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0005	13	11	2	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0006	12	11	1	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0007	11	10	1	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0008	11	10	1	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0009	7	0	7	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0010	3	1	2	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0011	2	0	0	2	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0012	2	2	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0013	2	0	0	2	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0014	2	0	2	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0015	2	0	0	2	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0016	2	2	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0017	1	1	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0018	1	1	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0019	1	1	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0020	1	0	1	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0021	1	1	0	0	0	0	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	g0022	1	1	0	0	0	0	CCNI2	chr5	132742426	132759403