JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNJL_chr5_160244083_160317564	0/0	g0329	1	0	0	0	1	0	CCNJL	chr5	160244083	160317564
CCNJ_chr10_96038583_96065870	1/0	g0001	67	3	18	32	2	11	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0002	44	0	0	40	0	4	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0003	32	2	18	1	7	4	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/1	g0004	27	12	9	0	3	2	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0005	23	0	0	23	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0006	19	19	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0007	19	2	0	15	0	2	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0008	12	0	4	5	0	3	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0009	8	8	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0010	6	0	0	6	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0011	6	5	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0012	6	0	3	3	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0013	6	6	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0014	5	0	0	5	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0015	5	5	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0016	5	0	0	5	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0017	4	3	1	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0018	4	0	2	0	1	1	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0019	4	2	1	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0020	4	0	0	4	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0021	3	0	0	3	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0022	3	0	0	3	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0023	3	0	0	3	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0024	3	0	2	0	0	1	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0025	3	0	2	0	1	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0026	3	0	0	3	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0027	3	3	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0028	2	0	0	1	0	1	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0029	2	0	0	0	0	2	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0030	2	0	0	2	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0031	2	0	0	2	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0032	2	0	1	0	0	1	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0033	2	0	2	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0034	2	0	0	0	0	2	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0035	2	2	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0036	2	0	0	2	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0037	2	0	0	2	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0038	2	0	0	0	0	2	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0039	2	0	2	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0040	2	1	1	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0041	2	1	1	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0042	2	2	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0043	1	0	1	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0044	1	0	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0045	1	1	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0046	1	0	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0047	1	0	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0048	1	0	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0049	1	0	1	0	0	0	CCNJ	chr10	96038583	96065870