JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNJ_chr10_96038583_96065870	0/0	g0100	1	0	1	0	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0101	1	0	0	0	0	1	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0102	1	0	0	1	0	0	CCNJ	chr10	96038583	96065870
CCNJ_chr10_96038583_96065870	0/0	g0103	1	1	0	0	0	0	CCNJ	chr10	96038583	96065870
CCNK_chr14_99476409_99517440	0/0	g0001	34	12	6	12	1	3	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0002	24	1	4	8	4	7	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0003	23	1	8	14	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0004	21	3	7	5	2	4	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0005	21	7	0	14	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0006	8	0	1	7	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0007	6	0	0	6	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0008	6	0	0	6	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0009	5	0	0	5	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0010	5	5	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0011	4	0	0	0	0	4	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0012	4	3	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0013	4	0	0	4	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0014	4	0	3	0	1	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0015	4	0	0	4	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0016	3	3	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	1/0	g0017	3	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0018	3	1	2	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0019	3	0	1	2	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0020	3	0	2	0	1	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0021	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0022	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0023	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0024	2	0	2	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0025	2	1	0	0	1	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0026	2	0	0	0	0	2	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0027	2	0	1	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0028	2	0	0	2	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0029	2	0	0	2	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0030	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0031	2	0	0	0	2	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0032	2	0	0	2	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0033	2	0	2	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0034	2	0	0	2	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0035	2	0	2	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0036	2	0	1	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0037	2	0	2	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0038	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0039	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0040	2	2	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0041	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0042	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0043	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0044	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0045	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0046	1	1	0	0	0	0	CCNK	chr14	99476409	99517440