JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNK_chr14_99476409_99517440	0/0	g0097	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0098	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0099	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0100	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0101	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0102	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0103	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0104	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0105	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0106	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0107	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0108	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0109	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0110	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0111	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0112	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0113	1	0	0	0	1	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0114	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0115	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0116	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0117	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0118	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0119	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0120	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0121	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0122	1	0	1	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0123	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0124	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0125	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0126	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0127	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0128	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0129	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0130	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0131	1	0	0	0	0	1	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0132	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0133	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0134	1	0	0	1	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0135	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0136	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0137	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	g0138	1	1	0	0	0	0	CCNK	chr14	99476409	99517440
CCNL1_chr3_157142553_157165147	1/0	g0001	87	12	20	36	6	12	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0002	76	1	19	45	7	4	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0003	26	3	0	18	0	5	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0004	24	0	1	19	0	4	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0005	13	0	3	10	0	0	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0006	12	11	1	0	0	0	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0007	11	11	0	0	0	0	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	g0008	10	0	0	10	0	0	CCNL1	chr3	157142553	157165147