JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCNL2_chr1_1380711_1404335	0/0	g0208	1	0	0	0	0	1	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0209	1	0	0	0	0	1	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0210	1	0	0	0	0	1	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0211	1	0	1	0	0	0	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0212	1	0	0	0	0	1	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0213	1	0	0	0	0	1	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0214	1	0	1	0	0	0	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0215	1	0	1	0	0	0	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0216	1	0	0	1	0	0	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	g0217	1	0	0	1	0	0	CCNL2	chr1	1380711	1404335
CCNO_chr5_55226152_55238608	1/1	g0001	213	37	49	95	5	25	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0002	62	12	5	40	2	3	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0003	61	11	8	28	4	10	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0004	12	3	7	0	0	2	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0005	6	5	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0006	6	5	0	0	0	1	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0007	3	3	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0008	3	0	0	0	0	3	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0009	2	2	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0010	2	1	1	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0011	2	2	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0012	2	2	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0013	1	0	0	0	1	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0014	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0015	1	1	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0016	1	1	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0017	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0018	1	0	1	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0019	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0020	1	0	1	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0021	1	1	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0022	1	1	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0023	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0024	1	1	0	0	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0025	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	g0026	1	0	0	1	0	0	CCNO	chr5	55226152	55238608
CCNP_chr19_40217208_40231689	0/0	g0001	86	4	16	49	4	13	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/1	g0002	81	9	13	53	5	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0003	48	18	2	27	0	1	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0004	29	9	5	12	1	2	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0005	26	1	17	2	1	5	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0006	20	9	8	0	1	2	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0007	10	10	0	0	0	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	1/0	g0008	8	0	1	5	1	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0009	6	6	0	0	0	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0010	6	0	3	3	0	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0011	5	0	2	0	2	1	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0012	5	4	0	1	0	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0013	5	0	0	5	0	0	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	g0014	4	4	0	0	0	0	CCNP	chr19	40217208	40231689