JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR10_chr17_42673889_42686843	1/1	g0002	155	25	31	77	5	15	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0003	14	10	4	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0004	7	6	1	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0005	5	5	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0006	4	4	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0007	3	3	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0008	3	0	0	0	0	3	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0009	3	3	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0010	3	0	0	3	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0011	2	1	1	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0012	2	0	2	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0013	1	1	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0014	1	0	0	0	0	1	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0015	1	0	0	0	0	1	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0016	1	0	1	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0017	1	1	0	0	0	0	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	g0018	1	1	0	0	0	0	CCR10	chr17	42673889	42686843
CCR1_chr3_46196711_46213313	0/0	g0001	178	34	38	87	8	11	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	1/1	g0002	30	3	5	18	1	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0003	20	0	5	6	0	9	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0004	20	0	4	11	0	5	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0005	9	1	5	0	2	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0006	7	1	2	2	0	2	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0007	7	0	0	7	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0008	6	6	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0009	5	5	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0010	4	3	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0011	4	4	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0012	3	0	1	2	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0013	3	1	2	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0014	3	3	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0015	3	0	0	3	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0016	3	0	2	0	0	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0017	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0018	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0019	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0020	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0021	2	0	0	1	0	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0022	2	0	0	2	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0023	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0024	2	2	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0025	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0026	1	0	0	0	0	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0027	1	0	0	0	0	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0028	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0029	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0030	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0031	1	0	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0032	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0033	1	0	0	0	0	1	CCR1	chr3	46196711	46213313