JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR1_chr3_46196711_46213313	0/0	g0034	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0035	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0036	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0037	1	0	0	0	1	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0038	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0039	1	0	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0040	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0041	1	0	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0042	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0043	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0044	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0045	1	0	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0046	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0047	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0048	1	0	1	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0049	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0050	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0051	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0052	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0053	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0054	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0055	1	0	0	0	0	1	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0056	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0057	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0058	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0059	1	0	0	1	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0060	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0061	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0062	1	1	0	0	0	0	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	g0063	1	0	0	0	0	1	CCR1	chr3	46196711	46213313
CCR2_chr3_46349111_46365940	1/1	g0001	140	7	20	86	6	19	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0002	93	12	24	48	1	8	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0003	71	4	10	51	4	2	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0004	23	22	1	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0005	23	0	6	7	0	10	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0006	21	7	10	1	3	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0007	16	16	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0008	7	6	1	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0009	5	0	0	5	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0010	5	0	0	5	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0011	4	4	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0012	4	4	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0013	3	0	0	3	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0014	2	2	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0015	2	0	2	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0016	2	2	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0017	1	0	0	0	0	1	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0018	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0019	1	0	0	0	0	1	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0020	1	0	0	1	0	0	CCR2	chr3	46349111	46365940