JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR2_chr3_46349111_46365940	0/0	g0021	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0022	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0023	1	0	0	0	0	1	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0024	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0025	1	0	0	0	0	1	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0026	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0027	1	1	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0028	1	0	0	0	0	1	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0029	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0030	1	1	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0031	1	0	0	1	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0032	1	1	0	0	0	0	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	g0033	1	1	0	0	0	0	CCR2	chr3	46349111	46365940
CCR3_chr3_46237460_46271706	0/0	g0001	17	0	0	17	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0002	17	0	2	9	3	3	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0003	14	0	8	0	2	4	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0004	14	0	3	9	0	2	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0005	11	0	0	11	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0006	7	0	6	0	1	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0007	7	0	3	1	0	3	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0008	6	4	2	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0009	5	0	0	5	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0010	5	0	0	5	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0011	5	0	0	5	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0012	5	5	0	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0013	5	4	1	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0014	5	0	4	1	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	1/1	g0015	5	1	2	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0016	4	4	0	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0017	4	3	1	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0018	4	4	0	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0019	4	0	0	4	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0020	4	0	0	4	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0021	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0022	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0023	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0024	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0025	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0026	3	0	1	2	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0027	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0028	3	0	3	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0029	3	0	1	2	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0030	3	3	0	0	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0031	3	0	0	3	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0032	2	0	0	0	0	2	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0033	2	0	0	0	0	2	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0034	2	0	0	1	0	1	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0035	2	0	0	2	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0036	2	0	0	2	0	0	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	g0037	2	0	1	0	0	1	CCR3	chr3	46237460	46271706