JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR4_chr3_32946644_32961349	0/0	g0008	2	0	0	2	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0009	2	0	0	2	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0010	1	0	0	1	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0011	1	1	0	0	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0012	1	0	0	1	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0013	1	1	0	0	0	0	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0014	1	0	0	0	0	1	CCR4	chr3	32946644	32961349
CCR4_chr3_32946644_32961349	0/0	g0015	1	0	0	1	0	0	CCR4	chr3	32946644	32961349
CCR5_chr3_46365946_46381206	0/0	g0001	132	10	19	84	7	12	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	1/1	g0002	122	44	19	42	6	9	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0003	103	12	21	61	1	8	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0004	23	0	6	7	0	10	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0005	21	18	3	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0006	4	0	4	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0007	3	3	0	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0008	2	0	0	2	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0009	2	0	0	2	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0010	1	0	0	1	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0011	1	0	0	1	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0012	1	0	0	1	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0013	1	0	0	0	0	1	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0014	1	0	0	0	0	1	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0015	1	1	0	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0016	1	0	1	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0017	1	0	1	0	0	0	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0018	1	0	0	0	0	1	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	g0019	1	0	0	1	0	0	CCR5	chr3	46365946	46381206
CCR6_chr6_167118096_167144141	0/0	g0001	15	0	7	7	0	1	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0002	6	0	0	6	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0003	6	0	0	3	0	3	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0004	5	0	0	4	1	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0005	4	3	1	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0006	4	0	0	1	1	2	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0007	4	0	4	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0008	4	0	4	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0009	3	0	1	0	0	2	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0010	3	3	0	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0011	3	0	1	0	1	1	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0012	3	0	2	1	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0013	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0014	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0015	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0016	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0017	2	2	0	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0018	2	2	0	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0019	2	2	0	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0020	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0021	2	0	0	2	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0022	2	1	1	0	0	0	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	g0023	2	0	0	2	0	0	CCR6	chr6	167118096	167144141