JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR7_chr17_40548769_40570472	0/0	g0103	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0104	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0105	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0106	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0107	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0108	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0109	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0110	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0111	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0112	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0113	1	0	0	1	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0114	1	0	1	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0115	1	0	1	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0116	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0117	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0118	1	0	1	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0119	1	0	1	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0120	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0121	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	g0122	1	1	0	0	0	0	CCR7	chr17	40548769	40570472
CCR8_chr3_39324709_39338680	0/0	g0001	160	10	30	99	2	19	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/1	g0002	125	55	15	39	4	11	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0003	37	4	15	0	8	10	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0004	15	0	3	11	0	1	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0005	10	1	2	7	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0006	5	5	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0007	4	0	2	0	1	1	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0008	4	4	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0009	3	3	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0010	3	0	0	3	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0011	2	0	0	2	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0012	2	0	0	2	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0013	2	2	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0014	2	2	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0015	2	0	2	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0016	1	0	1	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0017	1	0	0	0	0	1	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0018	1	0	1	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0019	1	0	0	0	1	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0020	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0021	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0022	1	0	0	1	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0023	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0024	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0025	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0026	1	0	0	1	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0027	1	0	1	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0028	1	0	0	0	0	1	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0029	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0030	1	0	0	1	0	0	CCR8	chr3	39324709	39338680