JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCR8_chr3_39324709_39338680	0/0	g0031	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0032	1	1	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0033	1	0	1	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	1/0	g0034	1	0	0	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0035	1	0	1	0	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0036	1	0	0	1	0	0	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	g0037	1	0	0	1	0	0	CCR8	chr3	39324709	39338680
CCR9_chr3_45881543_45908174	0/0	g0001	39	0	3	33	2	1	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0002	35	1	7	21	1	5	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0003	29	0	0	27	0	2	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0004	16	0	6	1	1	8	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0005	12	0	2	7	1	2	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0006	11	10	1	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0007	9	0	0	9	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0008	7	1	4	0	2	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0009	6	0	0	6	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0010	6	6	0	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0011	6	5	1	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0012	6	0	0	6	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0013	6	5	1	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0014	5	0	0	5	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0015	5	0	5	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0016	5	2	0	3	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0017	5	3	2	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0018	5	0	0	5	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0019	4	4	0	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0020	4	0	4	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0021	4	0	0	4	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0022	3	0	3	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0023	3	0	0	3	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0024	3	0	0	3	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0025	3	0	0	3	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0026	3	0	1	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0027	3	0	2	1	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0028	3	0	1	0	2	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0029	3	0	0	2	1	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0030	3	0	1	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0031	3	1	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0032	3	0	0	3	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0033	3	0	3	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0034	2	0	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0035	2	0	1	0	1	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0036	2	0	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0037	2	0	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0038	2	0	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0039	2	2	0	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0040	2	0	0	2	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0041	2	1	1	0	0	0	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0042	2	1	0	0	0	1	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	g0043	2	2	0	0	0	0	CCR9	chr3	45881543	45908174