JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCSER2_chr10_84323589_84523517	0/0	g0333	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0334	1	0	0	0	0	1	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0335	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0336	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0337	1	1	0	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0338	1	1	0	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0339	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0340	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0341	1	1	0	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0342	1	0	0	0	0	1	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0343	1	0	0	0	0	1	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0344	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0345	1	0	0	0	0	1	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0346	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0347	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0348	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0349	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0350	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0351	1	0	0	0	0	1	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0352	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0353	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0354	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0355	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0356	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0357	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0358	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0359	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0360	1	0	1	0	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0361	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0362	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0363	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0364	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0365	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0366	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0367	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0368	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	g0369	1	0	0	1	0	0	CCSER2	chr10	84323589	84523517
CCS_chr11_66588185_66611019	0/0	g0001	42	0	11	24	2	5	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	1/0	g0002	33	13	1	18	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/1	g0003	32	10	6	9	3	3	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0004	27	1	7	14	1	4	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0005	12	2	4	0	0	6	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0006	12	3	0	8	0	1	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0007	12	0	0	12	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0008	11	6	2	0	3	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0009	11	3	2	4	1	1	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0010	11	0	0	11	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0011	10	0	0	10	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0012	9	0	1	4	1	3	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0013	7	0	1	6	0	0	CCS	chr11	66588185	66611019