JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCS_chr11_66588185_66611019	0/0	g0114	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0115	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0116	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0117	1	0	0	0	0	1	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0118	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0119	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0120	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0121	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0122	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0123	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0124	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0125	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0126	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0127	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0128	1	1	0	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0129	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0130	1	0	0	1	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0131	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0132	1	0	1	0	0	0	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	g0133	1	1	0	0	0	0	CCS	chr11	66588185	66611019
CCT2_chr12_69580459_69606570	0/0	g0001	53	0	4	48	0	1	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0002	52	5	7	30	2	8	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0003	36	3	10	15	3	5	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	1/1	g0004	20	1	4	8	5	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0005	14	0	0	14	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0006	10	0	3	7	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0007	10	0	6	0	2	2	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0008	8	1	7	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0009	6	0	0	6	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0010	6	0	0	6	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0011	6	6	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0012	6	5	1	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0013	6	5	1	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0014	5	5	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0015	5	0	0	5	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0016	5	1	3	0	0	1	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0017	5	0	0	5	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0018	5	5	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0019	4	4	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0020	4	0	1	3	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0021	4	0	0	2	0	2	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0022	4	4	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0023	3	2	1	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0024	3	0	3	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0025	3	0	0	3	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0026	3	2	1	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0027	3	0	0	3	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0028	3	3	0	0	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0029	3	0	0	3	0	0	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	g0030	3	0	2	0	0	1	CCT2	chr12	69580459	69606570