JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCT3_chr1_156303968_156343292	0/0	g0251	1	1	0	0	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0252	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0253	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0254	1	0	0	0	0	1	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0255	1	0	1	0	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0256	1	0	1	0	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0257	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0258	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0259	1	1	0	0	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0260	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0261	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0262	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0263	1	0	0	0	0	1	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0264	1	0	0	0	0	1	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0265	1	0	0	1	0	0	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0266	1	0	0	0	0	1	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	g0267	1	1	0	0	0	0	CCT3	chr1	156303968	156343292
CCT4_chr2_61863085_61893656	0/0	g0001	21	0	2	14	3	2	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0002	15	0	3	9	1	2	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0003	12	2	4	1	1	4	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0004	11	2	0	9	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0005	8	0	3	5	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0006	8	0	3	3	1	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0007	7	0	0	7	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0008	7	0	4	3	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/1	g0009	7	0	0	3	2	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0010	6	0	0	6	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0011	6	0	2	0	2	2	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0012	6	0	1	2	0	3	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0013	4	0	2	0	1	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0014	4	0	0	4	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0015	4	3	1	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0016	3	0	2	1	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0017	3	3	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0018	3	0	0	3	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0019	3	0	0	2	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0020	3	3	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0021	3	1	2	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0022	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0023	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0024	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0025	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0026	2	0	0	0	0	2	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0027	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0028	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0029	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0030	2	0	0	1	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0031	2	1	1	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0032	2	0	0	2	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0033	2	0	0	2	0	0	CCT4	chr2	61863085	61893656