JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCT4_chr2_61863085_61893656	0/0	g0234	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0235	1	0	1	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0236	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0237	1	0	1	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0238	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0239	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0240	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0241	1	0	0	1	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0242	1	0	0	0	1	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0243	1	0	1	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0244	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0245	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0246	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0247	1	0	0	1	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0248	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0249	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0250	1	0	0	1	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0251	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0252	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0253	1	0	0	0	1	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0254	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0255	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0256	1	0	0	0	0	1	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0257	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0258	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	g0259	1	1	0	0	0	0	CCT4	chr2	61863085	61893656
CCT5_chr5_10245280_10271389	0/1	g0001	59	0	12	38	4	4	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0002	41	2	12	9	7	11	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	1/0	g0003	25	0	0	21	1	2	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0004	22	11	8	3	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0005	22	0	0	22	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0006	17	3	1	8	1	4	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0007	7	5	1	1	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0008	6	0	6	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0009	6	5	1	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0010	5	0	0	1	0	4	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0011	5	4	1	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0012	5	5	0	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0013	4	4	0	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0014	4	3	1	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0015	4	3	1	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0016	4	1	1	2	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0017	4	4	0	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0018	4	0	0	4	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0019	4	0	0	4	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0020	4	0	3	0	1	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0021	3	3	0	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0022	3	0	0	3	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0023	2	2	0	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0024	2	1	1	0	0	0	CCT5	chr5	10245280	10271389