JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCT5_chr5_10245280_10271389	0/0	g0125	1	0	1	0	0	0	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	g0126	1	1	0	0	0	0	CCT5	chr5	10245280	10271389
CCT6A_chr7_56046765_56068989	0/0	g0001	66	17	9	37	0	3	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0002	41	4	3	32	0	2	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0003	31	0	2	25	3	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0004	30	0	15	6	4	5	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/1	g0005	27	3	6	14	0	3	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	1/0	g0006	16	3	9	0	0	3	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0007	12	0	7	0	4	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0008	11	0	2	9	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0009	10	1	0	7	0	2	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0010	8	5	1	0	1	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0011	5	4	1	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0012	5	0	0	5	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0013	4	0	2	0	0	2	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0014	4	3	1	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0015	4	0	0	4	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0016	4	4	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0017	4	1	0	2	1	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0018	3	2	1	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0019	3	1	2	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0020	3	0	0	3	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0021	3	0	1	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0022	3	0	0	3	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0023	3	0	0	3	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0024	3	3	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0025	3	3	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0026	3	1	0	1	1	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0027	2	2	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0028	2	1	1	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0029	2	2	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0030	2	2	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0031	2	0	1	0	0	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0032	2	0	0	0	0	2	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0033	2	1	0	0	1	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0034	2	0	0	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0035	2	0	0	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0036	2	2	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0037	2	0	2	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0038	2	0	1	0	0	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0039	2	0	1	0	0	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0040	2	0	1	0	1	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0041	2	0	0	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0042	2	0	0	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0043	2	1	1	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0044	2	0	0	2	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0045	1	1	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0046	1	1	0	0	0	0	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0047	1	0	0	0	0	1	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	g0048	1	1	0	0	0	0	CCT6A	chr7	56046765	56068989