JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCT6B_chr17_34922861_34966460	0/0	g0222	1	0	0	0	1	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0223	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0224	1	0	0	1	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0225	1	0	0	1	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0226	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0227	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0228	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0229	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0230	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0231	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0232	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0233	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	1/0	g0234	1	0	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0235	1	0	0	0	0	1	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0236	1	1	0	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0237	1	0	0	0	0	1	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0238	1	0	0	1	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0239	1	0	1	0	0	0	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0240	1	0	0	0	0	1	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	g0241	1	0	1	0	0	0	CCT6B	chr17	34922861	34966460
CCT7_chr2_73229308_73258005	0/0	g0001	53	2	10	29	5	7	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0002	45	5	4	32	1	3	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0003	19	2	0	13	1	3	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0004	10	0	7	3	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0005	7	6	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/1	g0006	6	0	0	4	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0007	6	0	1	5	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0008	6	6	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0009	5	0	0	5	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0010	4	4	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0011	4	4	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0012	3	0	0	3	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0013	3	1	2	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0014	3	0	1	2	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0015	3	0	2	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0016	3	0	0	3	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0017	3	1	1	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0018	3	3	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0019	3	0	0	1	1	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0020	3	0	0	3	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0021	3	2	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0022	3	0	2	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0023	3	0	0	0	2	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0024	2	0	2	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0025	2	2	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0026	2	2	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0027	2	2	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0028	2	1	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0029	2	0	0	2	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0030	2	0	0	2	0	0	CCT7	chr2	73229308	73258005