JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CCT7_chr2_73229308_73258005	0/0	g0131	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0132	1	0	0	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0133	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0134	1	0	0	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0135	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0136	1	0	0	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0137	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0138	1	0	0	0	1	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0139	1	0	0	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0140	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0141	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0142	1	0	0	0	0	1	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0143	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0144	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0145	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0146	1	0	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0147	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0148	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0149	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0150	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0151	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0152	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0153	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0154	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0155	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0156	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0157	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0158	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0159	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0160	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0161	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0162	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0163	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0164	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0165	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0166	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0167	1	0	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0168	1	0	0	1	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0169	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0170	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0171	1	0	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0172	1	0	1	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0173	1	0	0	0	1	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0174	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	g0175	1	1	0	0	0	0	CCT7	chr2	73229308	73258005
CCT8L2_chr22_16585751_16597810	1/1	g0000	432	94	78	202	12	44	CCT8L2	chr22	16585751	16597810
CCT8_chr21_29051326_29078648	0/0	g0001	37	1	8	26	0	2	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	g0002	33	2	9	17	3	2	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/1	g0003	30	3	4	19	1	2	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	g0004	20	1	1	18	0	0	CCT8	chr21	29051326	29078648