JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD109_chr6_73691203_73833313	0/0	g0329	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0330	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0331	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0332	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0333	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0334	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0335	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0336	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0337	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0338	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0339	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0340	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0341	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0342	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0343	1	0	0	0	0	1	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0344	1	0	0	0	0	1	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0345	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0346	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0347	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0348	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0349	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0350	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0351	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0352	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0353	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0354	1	0	1	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0355	1	0	0	0	0	1	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0356	1	0	1	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0357	1	0	0	0	1	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0358	1	0	1	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0359	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0360	1	1	0	0	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0361	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	g0362	1	0	0	1	0	0	CD109	chr6	73691203	73833313
CD14_chr5_140626732_140638175	1/1	g0001	347	84	54	152	15	40	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0002	26	9	5	6	3	3	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0003	9	0	0	9	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0004	8	0	0	8	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0005	7	0	3	4	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0006	2	0	0	2	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0007	2	2	0	0	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0008	2	0	0	2	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0009	1	0	0	0	0	1	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0010	1	0	0	1	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0011	1	0	0	0	0	1	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0012	1	0	0	1	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0013	1	0	0	1	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0014	1	1	0	0	0	0	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	g0015	1	0	0	0	0	1	CD14	chr5	140626732	140638175
CD151_chr11_827952_843831	0/0	g0001	45	0	17	25	1	2	CD151	chr11	827952	843831