JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD164L2_chr1_27374176_27388333	0/0	g0013	2	0	1	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0014	2	0	0	2	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0015	2	0	0	2	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0016	2	2	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0017	2	2	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0018	2	2	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0019	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0020	1	0	1	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0021	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0022	1	0	1	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0023	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0024	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0025	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0026	1	0	0	1	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0027	1	0	0	0	1	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0028	1	0	0	1	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0029	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0030	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0031	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0032	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0033	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0034	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0035	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0036	1	0	0	1	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0037	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0038	1	0	0	1	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0039	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0040	1	0	1	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0041	1	1	0	0	0	0	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	g0042	1	0	0	0	0	1	CD164L2	chr1	27374176	27388333
CD164_chr6_109361514_109387467	0/0	g0001	75	0	15	44	4	12	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0002	38	0	9	21	1	7	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0003	23	2	1	19	1	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	1/1	g0004	20	3	10	1	2	2	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0005	16	1	6	5	0	4	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0006	13	0	2	10	0	1	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0007	12	0	0	12	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0008	11	0	1	9	1	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0009	11	1	0	9	0	1	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0010	10	0	3	7	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0011	9	9	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0012	7	0	0	7	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0013	6	6	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0014	6	6	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0015	5	2	3	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0016	5	5	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0017	5	2	0	3	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0018	5	0	0	5	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0019	4	1	0	0	0	3	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0020	4	0	0	4	0	0	CD164	chr6	109361514	109387467