JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD164_chr6_109361514_109387467	0/0	g0121	1	1	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0122	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0123	1	0	0	0	0	1	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0124	1	1	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0125	1	1	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0126	1	1	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0127	1	1	0	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0128	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0129	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0130	1	0	1	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0131	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0132	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0133	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0134	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0135	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0136	1	0	1	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0137	1	0	1	0	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0138	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0139	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	g0140	1	0	0	1	0	0	CD164	chr6	109361514	109387467
CD177_chr19_43348686_43368172	0/0	g0001	23	0	1	19	1	2	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0002	10	0	8	0	1	1	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0003	10	0	0	10	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0004	8	2	0	6	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0005	6	6	0	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0006	4	0	4	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0007	4	0	0	4	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0008	4	0	0	4	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0009	4	0	0	4	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0010	4	0	0	4	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0011	4	0	1	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0012	4	0	2	2	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0013	4	0	0	4	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0014	4	4	0	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0015	3	0	0	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0016	3	0	0	2	0	1	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0017	3	0	0	0	0	3	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0018	3	0	0	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0019	3	0	0	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0020	3	0	0	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0021	3	0	0	3	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0022	3	0	3	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0023	3	3	0	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0024	3	0	0	2	0	1	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0025	3	3	0	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0026	2	2	0	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0027	2	0	0	2	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0028	2	1	1	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0029	2	0	2	0	0	0	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	g0030	2	0	2	0	0	0	CD177	chr19	43348686	43368172