JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD180_chr5_67174613_67201799	0/0	g0153	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0154	1	0	1	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0155	1	0	1	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0156	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0157	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0158	1	0	0	0	0	1	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0159	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0160	1	0	0	1	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0161	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0162	1	0	0	1	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0163	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0164	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0165	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0166	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0167	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0168	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0169	1	1	0	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0170	1	0	1	0	0	0	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	g0171	1	0	0	1	0	0	CD180	chr5	67174613	67201799
CD19_chr16_28926971_28944342	1/1	g0001	155	24	38	69	6	16	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0002	61	7	16	29	4	5	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0003	35	19	0	7	0	9	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0004	32	12	0	19	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0005	30	1	2	25	0	2	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0006	12	1	0	11	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0007	11	8	2	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0008	6	0	0	6	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0009	6	0	0	6	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0010	4	0	0	4	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0011	3	0	0	3	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0012	3	3	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0013	2	0	0	0	0	2	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0014	2	0	0	0	0	2	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0015	2	0	0	1	1	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0016	2	0	2	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0017	2	2	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0018	2	2	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0019	2	2	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0020	1	0	1	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0021	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0022	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0023	1	0	1	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0024	1	0	1	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0025	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0026	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0027	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0028	1	0	0	0	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0029	1	0	0	0	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0030	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0031	1	1	0	0	0	0	CD19	chr16	28926971	28944342