JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
CD19_chr16_28926971_28944342	0/0	g0032	1	0	0	0	1	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0033	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0034	1	0	0	0	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0035	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0036	1	0	0	0	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0037	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0038	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0039	1	0	1	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0040	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0041	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0042	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0043	1	0	0	1	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0044	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0045	1	0	0	0	0	1	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0046	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	g0047	1	1	0	0	0	0	CD19	chr16	28926971	28944342
CD1A_chr1_158249424_158263269	0/0	g0001	104	14	22	58	0	10	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0002	61	7	7	33	3	11	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0003	49	2	1	40	0	6	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0004	36	2	5	25	0	4	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0005	28	24	3	0	0	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0006	18	5	2	8	2	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0007	17	2	6	5	2	2	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0008	14	2	1	9	1	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0009	12	4	4	2	0	2	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0010	12	7	0	5	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0011	7	0	2	5	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	1/0	g0012	7	0	4	0	1	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0013	5	0	3	0	2	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0014	5	0	0	5	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0015	4	0	0	4	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0016	3	0	0	3	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0017	3	0	0	3	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0018	3	0	1	2	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0019	3	3	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0020	3	3	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0021	3	0	3	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0022	3	3	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0023	3	0	3	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0024	2	0	1	0	1	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0025	2	0	0	0	0	2	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0026	2	0	0	0	0	2	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/1	g0027	2	0	1	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0028	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0029	1	0	0	1	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0030	1	0	0	0	1	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0031	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0032	1	0	0	0	0	1	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0033	1	1	0	0	0	0	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	g0034	1	0	0	0	0	1	CD1A	chr1	158249424	158263269